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title={Inferring causal molecular networks: empirical assessment through a community-based effort}, author={Hill, Steven M and Heiser, Laura M and Cokelaer, Thomas and Unger, Michael and Nesser, Nicole K and Carlin, Daniel E and Zhang, Yang and Sokolov, Artem and Paull, Evan O and Wong, Chris K and others}, journal={Nature methods}, volume={13}, number={4}, pages={310–318}, year={2016}, publisher={Nature Publishing Group}
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title={Glycated lysine-141 in haptoglobin improves the diagnostic accuracy for type 2 diabetes mellitus in combination with glycated hemoglobin HbA 1c and fasting plasma glucose}, author={Spiller, Sandro and Li, Yichao and Bl{"u}her, Matthias and Welch, Lonnie and Hoffmann, Ralf}, journal={Clinical proteomics}, volume={14}, number={1}, pages={10}, year={2017}, publisher={BioMed Central}
}
- @misc{hoffmann2017method,
title={Method and means for the non-invasive diagnosis of type ii diabetes mellitus}, author={Hoffmann, Ralf and Frolov, Andrej and Spiller, Sandro and Li, Yichao and Welch, Lonnie R}, year={2017}, month=feb # “~16”, note={US Patent App. 15/101,885}
}
- @article{lee2017tbx15,
title={Tbx15 defines a glycolytic subpopulation and white adipocyte heterogeneity}, author={Lee, Kevin Y and Sharma, Rita and Gase, Grant and Ussar, Siegfried and Li, Yichao and Welch, Lonnie and Berryman, Darlene E and Kispert, Andreas and Bluher, Matthias and Kahn, C Ronald}, journal={Diabetes}, volume={66}, number={11}, pages={2822–2829}, year={2017}, publisher={American Diabetes Association}
}
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title={Terahertz spectroscopic material identification using approximate entropy and deep neural network}, author={Li, Yichao and Shen, Xiaoping A. and Ewing, Robert L. and Li, Jia}, booktitle={2017 IEEE National Aerospace and Electronics Conference (NAECON)}, pages={pp–52}, year={2017}
}
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title={Diagnostic accuracy of protein glycation sites in long-term controlled patients with type 2 diabetes mellitus and their prognostic potential for early diagnosis}, author={Spiller, Sandro and Li, Yichao and Bl{"u}her, Matthias and Welch, Lonnie and Hoffmann, Ralf}, journal={Pharmaceuticals}, volume={11}, number={2}, pages={38}, year={2018}, publisher={Multidisciplinary Digital Publishing Institute}
}
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title={Set cover-based methods for motif selection}, author={Li, Yichao and Liu, Yating and Juedes, David and Drews, Frank and Bunescu, Razvan and Welch, Lonnie}, journal={Bioinformatics}, volume={36}, number={4}, pages={1044–1051}, year={2020}, publisher={Oxford University Press}
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title={Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting}, author={Grote, Alexandra and Li, Yichao and Liu, Canhui and Voronin, Denis and Geber, Adam and Lustigman, Sara and Unnasch, Thomas R and Welch, Lonnie and Ghedin, Elodie}, journal={PLoS neglected tropical diseases}, volume={14}, number={6}, pages={e0008275}, year={2020}, publisher={Public Library of Science San Francisco, CA USA}
}
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title={Sex chromosome evolution in parasitic nematodes of humans}, author={Foster, Jeremy M and Grote, Alexandra and Mattick, John and Tracey, Alan and Tsai, Yu-Chih and Chung, Matthew and Cotton, James A and Clark, Tyson A and Geber, Adam and Holroyd, Nancy and others}, journal={Nature communications}, volume={11}, number={1}, pages={1–12}, year={2020}, publisher={Nature Publishing Group}
}
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title={CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity}, author={Lazzarotto, Cicera R and Malinin, Nikolay L and Li, Yichao and Zhang, Ruochi and Yang, Yang and Lee, GaHyun and Cowley, Eleanor and He, Yanghua and Lan, Xin and Jividen, Kasey and others}, journal={Nature Biotechnology}, volume={38}, number={11}, pages={1317–1327}, year={2020}, publisher={Nature Publishing Group}
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title={Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C}, author={Beagrie, Robert A and Thieme, Christoph J and Annunziatella, Carlo and Baugher, Catherine and Zhang, Yingnan and Schueler, Markus and Kramer, Dorothee CA and Chiariello, Andrea M and Bianco, Simona and Kukalev, Alexander and others}, journal={bioRxiv}, year={2020}, publisher={Cold Spring Harbor Laboratory}
}
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title={Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana}, author={Li, Yichao and Mullin, Maxwell and Zhang, Yingnan and Drews, Frank and Welch, Lonnie R and Showalter, Allan M}, journal={Plants}, volume={9}, number={12}, pages={1751}, year={2020}, publisher={Multidisciplinary Digital Publishing Institute}
}
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title={Dynamic CTCF binding directly mediates interactions among cis-regulatory elements essential for hematopoiesis}, author={Qi, Qian and Cheng, Li and Tang, Xing and He, Yanghua and Li, Yichao and Yee, Tiffany and Shrestha, Dewan and Feng, Ruopeng and Xu, Peng and Zhou, Xin and others}, journal={Blood}, year={2020}
}