HemTools
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  • NGS pipelines
  • Data Visualization
  • Motif Analysis Suite
  • Integrative Analysis
  • Linux Art
  • Installation
  • A collection of Jupyter Notebooks
  • Bioinformatic Tools
  • Accessible Data in HemTools
  • Gallery (stand-alone tools)
    • Add gene annotations to CHANGE-seq off-targets table
    • Manhanttan plot in circos
    • Upload your bw and bed files to protein paint
    • Plot hematopoiesis intensity, blood lineage
    • Peak Annotation using GREAT
    • A simple solution to submit LSF jobs
    • Circos Manhanttan plot
    • Peak Annotation GREAT
    • Add gene annotations to CHANGE-seq off-targets table
    • Upload your bw and bed files to protein paint
    • Plot hematopoiesis
  • Differential Analysis pipelines
  • Study notes
  • Machine Learning pipelines
  • CRISPR tools
  • Bioinformatics Core Competencies
  • HemAgent: Autonomous and Reproducible Bioinformatics
HemTools
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  • Gallery (stand-alone tools)
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Gallery (stand-alone tools)¶

  • Add gene annotations to CHANGE-seq off-targets table
  • Manhanttan plot in circos
  • Upload your bw and bed files to protein paint
  • Plot hematopoiesis intensity, blood lineage
  • Peak Annotation using GREAT
  • A simple solution to submit LSF jobs

Circos Manhanttan plot¶

../../_images/circos_Manhanttan.png

Peak Annotation GREAT¶

../../_images/pyGREAT.PNG

Add gene annotations to CHANGE-seq off-targets table¶

../../_images/change_seq_output.png

Upload your bw and bed files to protein paint¶

../../_images/ppr.png

Plot hematopoiesis¶

../../_images/plot_blood_lineage.PNG

code @ github.
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© Copyright 2020, Yichao Li, Yong Cheng.

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