Study notes

• Notes on ATAC-seq, open chromatin, and footprints/motif
• Hosting web server on AWS
• Current observations/claims for CTCF in insulation potency and chromatin interaction
• Duplicated sequences in HBG1/HBG2 promoters
• Duplicated reads, multi-mapped reads
• Notes on python
• R for python people
• Tsai Lab Bioinformatics
• Thoughts on HemTools
• bioinformatics
• Chromatin Interaction data analysis
• pegRNA design
• Facts about CRISPR-Cas9
• Docker your applications
• All errors and how it was solved
• Concepts, names, and other small things to remember
• install tensorlfow on stjude HPC
• A very good description of histone marks
• Motif notes
• Python Pandas
• Notes on how to use plink
• Quantify mutations
• All questions and how it was solved
• (Notes) single-cell RNA-seq analysis
• Using Scanpy to replace pandas
• Published statistics about genome biology

code @ github.