HemTools
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NGS pipelines
Data Visualization
Motif Analysis Suite
Integrative Analysis
Linux Art
Installation
A collection of Jupyter Notebooks
Bioinformatic Tools
Accessible Data in HemTools
Gallery (stand-alone tools)
Differential Analysis pipelines
Study notes
Notes on ATAC-seq, open chromatin, and footprints/motif
Hosting web server on AWS
Current observations/claims for CTCF in insulation potency and chromatin interaction
Duplicated sequences in HBG1/HBG2 promoters
Duplicated reads, multi-mapped reads
Notes on python
R for python people
Thoughts on HemTools
bioinformatics
Chromatin Interaction data analysis
pegRNA design
Facts about CRISPR-Cas9
Docker your applications
All errors and how it was solved
Concepts, names, and other small things to remember
install tensorlfow on stjude HPC
A very good description of histone marks
Motif notes
Python Pandas
Notes on how to use plink
Quantify mutations
All questions and how it was solved
single-cell RNA-seq analysis
Using Scanpy to replace pandas
Published statistics about genome biology
Machine Learning pipelines
CRISPR tools
Bioinformatics Core Competencies
HemTools
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Study notes
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All questions and how it was solved
All questions and how it was solved
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code @ github
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