Using Scanpy to replace pandas¶
Summary¶
The AnnData object is more powerful than pandas. Moreover, scanpy provides some automatically operations and visualizations easier for EDA.
Usage¶
AnnData is usually stored as h5ad file, which is quite different than csv or txt files I used daily.
Reference¶
https://scanpy.readthedocs.io/en/stable/usage-principles.html
https://falexwolf.me/2017/introducing-anndata/
https://github.com/scverse/anndata/issues/600