HemTools
latest
  • NGS pipelines
  • Data Visualization
  • Motif Analysis Suite
    • Motif scanning using consensus sequence
    • Known motif finding given fasta sequences
    • Homer motif discovery
    • Homer motif enrichment analysis
    • Calculate motif occurrence given bed
    • Generate Motif logo
    • Methylated Motif Discovery
    • Motif Annotation
    • Find dense motif clusters
    • FIMO motif scanning
  • Integrative Analysis
  • Linux Art
  • Installation
  • A collection of Jupyter Notebooks
  • Bioinformatic Tools
  • Accessible Data in HemTools
  • Gallery (stand-alone tools)
  • Differential Analysis pipelines
  • Study notes
  • Machine Learning pipelines
  • CRISPR tools
  • Bioinformatics Core Competencies
  • HemAgent: Autonomous and Reproducible Bioinformatics
HemTools
  • »
  • Motif Analysis Suite »
  • Generate Motif logo
  • Edit on GitHub

Generate Motif logoΒΆ

The following commands provide examples to covert eps to pdf / png.

module load meme

module load texlive/20190410

meme2images -eps Supp_File_motif_PWM.meme logo

cd logo

for i in *.eps; do sed -i 's/showFineprint true/showFineprint false/' $i;done

for i in *.eps;do epstopdf $i -o=$i.pdf;done

for i in *.pdf;do convert -density 300 -trim $i -quality 100 $i.png;done

code @ github.

Next Previous

© Copyright 2020, Yichao Li, Yong Cheng.

Built with Sphinx using a theme provided by Read the Docs.