Calculate average signal given bed file¶
usage: bw_over_bed.py [-h] [--bw_files BW_FILES] [--bed_files BED_FILES]
[--extend EXTEND] [-o OUTPUT]
optional arguments:
-h, --help show this help message and exit
--bw_files BW_FILES input a list of bw files, use * to indicate all bw
files in the current dir (default: *)
--bed_files BED_FILES
input a list of bed/Peak files, use * to indicate all
bed/Peak files in the current dir (default: *)
--extend EXTEND extend bed file (default: 0)
-o OUTPUT, --output OUTPUT
output prefix (default:
yli11_2019-12-06_1952e43c5a3b.averageBW)
Usage¶
hpcf_interative.sh
module load python/2.7.13 ucsc/041619
bw_over_bed.py
By default, this program will output a count table for each bed file in the current dir.