HemTools
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NGS pipelines
Data Visualization
Motif Analysis Suite
Integrative Analysis
Linux Art
Installation
A collection of Jupyter Notebooks
Bioinformatic Tools
Accessible Data in HemTools
Gallery (stand-alone tools)
Differential Analysis pipelines
Study notes
Machine Learning pipelines
CRISPR tools
Bioinformatics Core Competencies
Calculate DEG gene expression level in the same TAD
What is JupyterLab?
Data analysis using Pandas
Data visualization using Seaborn and many other libraries
What is MA plot?
Common NGS data formats and tools
Hypothesis testing
Volcano plot
Find all genes in given TAD region (Language: Chinese)
DeepTools tutorial
Gene expression data analysis
homer motif result interpretation
Merge ChIP-seq peaks and Diff Gene Tables (Language: Chinese)
Video tutorial: pooled gRNA screenining
pysam example: checking softclip reads
Density plot using python
Python Heatmap plots
Introduction
Approach
Reference
HemTools
Docs
»
Bioinformatics Core Competencies
»
Gene expression data analysis
Gene expression data analysis
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code @ github
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Additional Resources
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