Creat data table of tracks on protein paint¶
usage: create_ppr_facet_table.py [-h] -f INPUT_TSV -d DIR --name NAME
create tracks
optional arguments:
-h, --help show this help message and exit
-f INPUT_TSV, --input_tsv INPUT_TSV
tsv file (default: None)
-d DIR, --dir DIR genome browser HPC dir (default: None)
--name NAME your track name (default: None)
Example¶
Input¶
A tsv table summary of your data.
Output¶
The genome browser can be accessed through for example: https://ppr.stjude.org/?genome=hg19&block=1&tkjsonfile=yli11/PRPF19/track_collections/tracks.json
Usage¶
hpcf_interactive
module load conda3
source activate /home/yli11/.conda/envs/captureC
create_ppr_facet_table.py -f ppr.facet_table.tsv -d path_to_genomebrowser_HPC --name PRPF19_tracks