Average signal over multiple peaks¶
usage: signal_plot2.py [-h] [-j JID] [--current_dir] [-u U] [-d D]
[--bw_list BW_LIST] [--bed_list BED_LIST]
signal plot 2
optional arguments:
-h, --help show this help message and exit
-j JID, --jid JID enter a job ID, which is used to make a new directory.
Every output will be moved into this folder. (default:
signal_plot2_yli11_2020-02-04)
--current_dir plot all bw files and all bed files (default: False)
-u U upstream flanking length (default: 5000)
-d D downstream flanking length (default: 5000)
--bw_list BW_LIST bw_file_list (default: None)
--bed_list BED_LIST bed_list (default: None)
Summary¶
Put all your peak files and bw files in one folder and use this program to generate a plot for each bw file. This program will use all *.bw *.bed *Peak
files in the current dir.
Example¶
Input¶
No input required. Just put all your files in a folder.
Output¶
You will receive each figure through email.
Usage¶
hpcf_interactive
module load python/2.7.13
signal_plot2.py --current_dir