GUIDE-seq, CHANGE-seq, sequence visualization svg

Input

Prepare a table below. Table header needs to be the same. Row order is the plot order.

All columns are required. Yellow column need some sequence. Green column can be any string, including empty.

../../_images/seqvis_input.png

Output

../../_images/seqvis_output.png

Usage

hpcf_interactive

module load conda3/202402

source activate /home/yli11/.conda/envs/jupyterlab_2024

visualization_regular_seqvis.py -f input.csv -o AAVS1_site_14

code @ github.