calculate chrM percent¶
Code from: https://yiweiniu.github.io/blog/2019/03/ATAC-seq-data-analysis-from-FASTQ-to-peaks/
Tested the correctness.
Usage¶
module load samtools/1.7
bam_chrM_percent.sh Hudep2_S120_GFP_neg_ARID3A_2.markdup.bam
output
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Hudep2_S120_GFP_neg_ARID3A_2.markdup.bam : .43%