Input¶
I usually put soft links of bw files and bed files in the same working dir. Then run bw_over_bed.py will give me a feature table for each bed file in the current dir.
HUDEP2_LRF_CHIP.rmdup.bw
Hudep2_D3_merged_GATA1.all.bw
loci.bed
Hudep2_ATAC.rmdup.bw
Hudep2_D3_merged_KLF1.all.bw
Hudep2_BCL11A.rmdup.bw
Hudep2_D3_merged_LDB1.all.bw
Hudep2_D3_merged_CTCF.all.bw
Hudep2_D3_merged_TAL1.all.bw
Usage¶
module load ucsc/041619
bw_over_bed.py