long-read RNA-seq quantification using espresso

Summary

long-read RNA-seq quantification using espresso 1.6.0

https://github.com/Xinglab/espresso

Input

Aligned bam files. Save as samples.tsv in your working dir. ALso need .bai in current dir. Abs path.

/path/to/first.sorted.bam       first_sample_name
/path/to/second.sorted.bam      second_sample_name

Usage

hpcf_interactive.sh

module load python/2.7.13

# cd to your working dir

run_lsf.py -p pacbio_expresso

Output

In the jobID folder, see esp file

Comments

code @ github.