convert dataframe to html¶
usage: dataframe_to_html.py [-h] -f INPUT [-o OUTPUT] [-s SEP] [-w WIDTH]
[-H HEIGHT] [--sort SORT] [--motif]
optional arguments:
-h, --help show this help message and exit
-f INPUT, --input INPUT
dataframe (default: None)
-o OUTPUT, --output OUTPUT
output name (default: output.html)
-s SEP, --sep SEP output name (default: )
-w WIDTH, --width WIDTH
output name (default: 200)
-H HEIGHT, --height HEIGHT
output name (default: 200)
--sort SORT sort by column name (default: None)
--motif generate motif html (default: False)
Summary¶
Convert a dataframe to html table. This html table can be further converted to pdf table.
Input¶
A data frame
Output¶
html
Usage¶
Suppose all your bam files are in the current working dir.
hpcf_interactive
module load python/2.7.13
dataframe_to_html.py -f input.csv -s ,
The following is specific to generate motif table.
dataframe_to_html.py -f motif_report.csv -s , -w 100 -H 50 --sort "Motif p_value" --motif
Convert html to pdf:
pandoc output.html -t latex -o test.pdf -V geometry:a3paper