GTF operations

Get gene bed

module load pygtftk
gtftk select_by_key -i Homo_sapiens.add_chr.GRCh38.96.gtf -k feature -v gene | gtftk convert -n gene_name  -f bed6| head -n 3

REF: https://dputhier.github.io/pygtftk/conversion.html#convert

code @ github.