Run fastQC for a list of fastq files¶
Input¶
A list of fastq files. If these files are in the current dir, you can create this input list by:
ls *fastq.gz > input.list
ls *fastq >>input.list
ls *fq.gz >>input.list
ls *fq >> input.list
Usage¶
hpcf_interactive
module load python/2.7.13
run_lsf -f input.list -p fastqc
Output¶
You will receive a QC report by email.
Please check the fastqc documentation for each invidual metric explanation. https://www.bioinformatics.babraham.ac.uk/projects/fastqc/