OnTAD¶
Installation¶
/home/yli11/Programs/test/OnTAD/src
module load gcc/6.3.0
module load gsl/1.9
g++ -I /nfs_exports/apps/64-bit/gnu-apps/gsl-1.9/include/ -c main.cpp step1.cpp step2.cpp step3.cpp step4.cpp common.cpp
g++ main.o step1.o step2.o step3.o step4.o common.o -lm -o OnTAD
rm main.o step1.o step2.o step3.o step4.o common.o
Usage¶
module load gcc/6.3.0
OnTAD
OnTAD chr18_KR.matrix -penalty 0.1 -maxsz 200 -o OnTAD_KRnorm_pen0.1_max200_chr18.tad
for i in *.matrix;do OnTAD $i -o $i.ontad;done